Genotype-probability simplex plots
Each point is one of 450 individuals at its GP triple (P(0/0), P(0/1), P(1/1)), colored by health score (blue = negative, red = positive, gray = 0). Top 200 SNPs per criterion per file. Interactive pages: use the dropdown, arrow keys, or swipe to switch SNPs; tap a point for sample details. Interactive files are ~14 MB each.
Pruned VCF — 4,645,837 SNPs (LD-pruned)
Health association
|Pearson r| between ALT dosage and health — color trends across the triangle.
Genotype uncertainty
Mean entropy of GP triples — points spread along edges and interior.
Cluster health separation
ANOVA F of health across hard-called genotypes — corners with distinct colors.
Full VCF — 17,223,974 SNPs
Health association
|Pearson r| between ALT dosage and health — color trends across the triangle.
Genotype uncertainty
Mean entropy of GP triples — points spread along edges and interior.
Cluster health separation
ANOVA F of health across hard-called genotypes — corners with distinct colors.
Underlying data
Per-SNP statistics for every SNP
(chrom, pos, AF, DR2, r, entropy, F) — re-rank without rescanning.
Individual PNGs are in pruned/png/ and full/png/.